Index

A

a1 (freud.data.UnitCell property) a2 (freud.data.UnitCell property) a3 (freud.data.UnitCell property) AABBQuery (class in freud.locality) all_pairs() (freud.locality.NeighborList class method)

angles (freud.environment.AngularSeparationGlobal property) (freud.environment.AngularSeparationNeighbor property) AngularSeparationGlobal (class in freud.environment) AngularSeparationNeighbor (class in freud.environment) average (freud.order.Steinhardt property)

B

basis_positions (freud.data.UnitCell property) bcc() (freud.data.UnitCell class method) bin_centers (freud.density.CorrelationFunction property) (freud.density.RDF property) (freud.diffraction.StaticStructureFactorDirect property) (freud.environment.BondOrder property) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) bin_counts (freud.density.CorrelationFunction property) (freud.density.RDF property) (freud.environment.BondOrder property) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) bin_edges (freud.density.CorrelationFunction property) (freud.density.RDF property) (freud.diffraction.StaticStructureFactorDirect property) (freud.environment.BondOrder property) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) bins (freud.density.CorrelationFunction property) bond_order (freud.environment.BondOrder property) BondOrder (class in freud.environment)

bounds (freud.density.CorrelationFunction property) (freud.density.RDF property) (freud.diffraction.StaticStructureFactorDebye property) (freud.diffraction.StaticStructureFactorDirect property) (freud.environment.BondOrder property) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) Box (class in freud.box) box (freud.data.UnitCell property) (freud.density.CorrelationFunction property) (freud.density.GaussianDensity property) (freud.density.LocalDensity property) (freud.density.RDF property) (freud.density.SphereVoxelization property) (freud.environment.BondOrder property) (freud.locality.AABBQuery property) (freud.locality.LinkCell property) (freud.locality.NeighborQuery property) (freud.msd.MSD property) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) buffer_box (freud.locality.PeriodicBuffer property) buffer_ids (freud.locality.PeriodicBuffer property) buffer_points (freud.locality.PeriodicBuffer property)

C

cell_width (freud.locality.LinkCell property) center() (freud.box.Box method) center_of_mass() (freud.box.Box method) centers (freud.cluster.ClusterProperties property) centers_of_mass (freud.cluster.ClusterProperties property) Cluster (class in freud.cluster) cluster_environments (freud.environment.EnvironmentCluster property) cluster_idx (freud.cluster.Cluster property) (freud.environment.EnvironmentCluster property) (freud.order.SolidLiquid property) cluster_keys (freud.cluster.Cluster property) cluster_masses (freud.cluster.ClusterProperties property) cluster_sizes (freud.order.SolidLiquid property) ClusterProperties (class in freud.cluster) compute() (freud.cluster.Cluster method) (freud.cluster.ClusterProperties method) (freud.density.CorrelationFunction method) (freud.density.GaussianDensity method) (freud.density.LocalDensity method) (freud.density.RDF method) (freud.density.SphereVoxelization method) (freud.diffraction.DiffractionPattern method) (freud.diffraction.StaticStructureFactorDebye method) (freud.diffraction.StaticStructureFactorDirect method) (freud.environment.AngularSeparationGlobal method) (freud.environment.AngularSeparationNeighbor method) (freud.environment.BondOrder method) (freud.environment.EnvironmentCluster method) (freud.environment.EnvironmentMotifMatch method) (freud.environment.LocalBondProjection method) (freud.environment.LocalDescriptors method) (freud.interface.Interface method) (freud.locality.Filter method) (freud.locality.FilterRAD method) (freud.locality.FilterSANN method) (freud.locality.PeriodicBuffer method) (freud.locality.Voronoi method) (freud.msd.MSD method) (freud.order.ContinuousCoordination method) (freud.order.Cubatic method) (freud.order.Hexatic method) (freud.order.Nematic method) (freud.order.RotationalAutocorrelation method) (freud.order.SolidLiquid method) (freud.order.Steinhardt method) (freud.pmft.PMFTR12 method) (freud.pmft.PMFTXY method) (freud.pmft.PMFTXYT method) (freud.pmft.PMFTXYZ method)

compute_all_distances() (freud.box.Box method) compute_distances() (freud.box.Box method) compute_exp (freud.order.ContinuousCoordination property) compute_log (freud.order.ContinuousCoordination property) contains() (freud.box.Box method) ContinuousCoordination (class in freud.order) coordination (freud.order.ContinuousCoordination property) copy() (freud.locality.NeighborList method) copy_c() (freud.locality.NeighborList method) correlation (freud.density.CorrelationFunction property) CorrelationFunction (class in freud.density) Cubatic (class in freud.order) cubatic_tensor (freud.order.Cubatic property) cube() (freud.box.Box class method) cubic (freud.box.Box property)

D

default_query_args (freud.cluster.Cluster property) (freud.density.CorrelationFunction property) (freud.density.LocalDensity property) (freud.density.RDF property) (freud.environment.AngularSeparationNeighbor property) (freud.environment.BondOrder property) (freud.environment.EnvironmentCluster property) (freud.environment.EnvironmentMotifMatch property) (freud.environment.LocalBondProjection property) (freud.environment.LocalDescriptors property) (freud.interface.Interface property) (freud.locality.Filter property) (freud.locality.FilterRAD property) (freud.locality.FilterSANN property) (freud.order.ContinuousCoordination property) (freud.order.Hexatic property) (freud.order.SolidLiquid property) (freud.order.Steinhardt property) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property)

density (freud.density.GaussianDensity property) (freud.density.LocalDensity property) diameter (freud.density.LocalDensity property) diffraction (freud.diffraction.DiffractionPattern property) DiffractionPattern (class in freud.diffraction) dimensions (freud.box.Box property) (freud.data.UnitCell property) director (freud.order.Nematic property) distances (freud.locality.NeighborList property)

E

EnvironmentCluster (class in freud.environment)

EnvironmentMotifMatch (class in freud.environment)

F

fcc() (freud.data.UnitCell class method) Filter (class in freud.locality) filter() (freud.locality.NeighborList method) filter_r() (freud.locality.NeighborList method) filtered_nlist (freud.locality.Filter property) (freud.locality.FilterRAD property) (freud.locality.FilterSANN property) FilterRAD (class in freud.locality) FilterSANN (class in freud.locality) find_first_index() (freud.locality.NeighborList method) freud.box module freud.cluster module freud.data module freud.density module freud.diffraction module freud.environment module

freud.interface module freud.locality module freud.msd module freud.order module freud.parallel module freud.pmft module from_arrays() (freud.locality.NeighborList class method) from_box() (freud.box.Box class method) from_box_lengths_and_angles() (freud.box.Box class method) from_cif() (freud.data.UnitCell class method) from_matrix() (freud.box.Box class method) from_system() (freud.locality.AABBQuery class method) (freud.locality.LinkCell class method) (freud.locality.NeighborQuery class method)

G

GaussianDensity (class in freud.density) generate_system() (freud.data.UnitCell method) get_box_vector() (freud.box.Box method) get_images() (freud.box.Box method)

get_num_threads() (in module freud.parallel) get_ptr() (freud.locality.NeighborList method) global_tensor (freud.order.Cubatic property) grid_size (freud.diffraction.DiffractionPattern property) gyrations (freud.cluster.ClusterProperties property)

H

hex() (freud.data.UnitCell class method)

Hexatic (class in freud.order)

I

inertia_tensors (freud.cluster.ClusterProperties property)

Interface (class in freud.interface) is2D (freud.box.Box property)

K

k (freud.order.Hexatic property) k_max (freud.diffraction.StaticStructureFactorDebye property) (freud.diffraction.StaticStructureFactorDirect property) k_min (freud.diffraction.StaticStructureFactorDebye property) (freud.diffraction.StaticStructureFactorDirect property)

k_points (freud.diffraction.StaticStructureFactorDirect property) k_values (freud.diffraction.DiffractionPattern property) (freud.diffraction.StaticStructureFactorDebye property) k_vectors (freud.diffraction.DiffractionPattern property)

L

L (freud.box.Box property) l (freud.order.RotationalAutocorrelation property) (freud.order.SolidLiquid property) (freud.order.Steinhardt property) L_inv (freud.box.Box property) l_max (freud.environment.LocalDescriptors property) largest_cluster_size (freud.order.SolidLiquid property)

lattice_vectors (freud.data.UnitCell property) LinkCell (class in freud.locality) LocalBondProjection (class in freud.environment) LocalDensity (class in freud.density) LocalDescriptors (class in freud.environment) Lx (freud.box.Box property) Ly (freud.box.Box property) Lz (freud.box.Box property)

M

make_absolute() (freud.box.Box method) make_fractional() (freud.box.Box method) make_random_system() (in module freud.data) matches (freud.environment.EnvironmentMotifMatch property) min_valid_k (freud.diffraction.StaticStructureFactorDebye property) (freud.diffraction.StaticStructureFactorDirect property) mode (freud.environment.BondOrder property) (freud.environment.LocalDescriptors property) module freud.box freud.cluster freud.data freud.density freud.diffraction freud.environment freud.interface freud.locality freud.msd freud.order freud.parallel freud.pmft

MSD (class in freud.msd) msd (freud.msd.MSD property)

N

N_points (freud.diffraction.DiffractionPattern property) n_r (freud.density.RDF property) n_replicates (freud.order.Cubatic property) nbins (freud.density.CorrelationFunction property) (freud.density.RDF property) (freud.diffraction.StaticStructureFactorDirect property) (freud.environment.BondOrder property) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) negative_m (freud.environment.LocalDescriptors property) neighbor_counts (freud.locality.NeighborList property) NeighborList (class in freud.locality) NeighborQuery (class in freud.locality) NeighborQueryResult (class in freud.locality) Nematic (class in freud.order) nematic_tensor (freud.order.Nematic property)

nlist (freud.environment.AngularSeparationNeighbor property) (freud.environment.LocalBondProjection property) (freud.environment.LocalDescriptors property) (freud.locality.Voronoi property) (freud.order.SolidLiquid property) normalize_q (freud.order.SolidLiquid property) normed_projections (freud.environment.LocalBondProjection property) num_clusters (freud.cluster.Cluster property) (freud.environment.EnvironmentCluster property) num_connections (freud.order.SolidLiquid property) num_k_values (freud.diffraction.StaticStructureFactorDebye property) num_neighbors (freud.density.LocalDensity property) num_points (freud.locality.NeighborList property) num_query_points (freud.locality.NeighborList property) num_sampled_k_points (freud.diffraction.StaticStructureFactorDirect property) num_sphs (freud.environment.LocalDescriptors property) number_of_coordinations (freud.order.ContinuousCoordination property) NumThreads (class in freud.parallel)

O

order (freud.order.Cubatic property) (freud.order.Nematic property) (freud.order.RotationalAutocorrelation property) (freud.order.Steinhardt property)

orientation (freud.order.Cubatic property) output_size (freud.diffraction.DiffractionPattern property)

P

particle_harmonics (freud.order.SolidLiquid property) (freud.order.Steinhardt property) particle_msd (freud.msd.MSD property) particle_order (freud.order.ContinuousCoordination property) (freud.order.Cubatic property) (freud.order.Hexatic property) (freud.order.RotationalAutocorrelation property) (freud.order.Steinhardt property) particle_tensor (freud.order.Nematic property) periodic (freud.box.Box property) periodic_x (freud.box.Box property) periodic_y (freud.box.Box property) periodic_z (freud.box.Box property) PeriodicBuffer (class in freud.locality) plot() (freud.box.Box method) (freud.cluster.Cluster method) (freud.density.CorrelationFunction method) (freud.density.GaussianDensity method) (freud.density.RDF method) (freud.density.SphereVoxelization method) (freud.diffraction.DiffractionPattern method) (freud.diffraction.StaticStructureFactorDebye method) (freud.diffraction.StaticStructureFactorDirect method) (freud.environment.EnvironmentCluster method) (freud.locality.AABBQuery method) (freud.locality.LinkCell method) (freud.locality.NeighborQuery method) (freud.locality.Voronoi method) (freud.msd.MSD method) (freud.order.Hexatic method) (freud.order.SolidLiquid method) (freud.order.Steinhardt method) (freud.pmft.PMFTXY method)

pmft (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) PMFTR12 (class in freud.pmft) PMFTXY (class in freud.pmft) PMFTXYT (class in freud.pmft) PMFTXYZ (class in freud.pmft) point_count (freud.interface.Interface property) point_environments (freud.environment.EnvironmentCluster property) (freud.environment.EnvironmentMotifMatch property) point_ids (freud.interface.Interface property) point_indices (freud.locality.NeighborList property) points (freud.locality.AABBQuery property) (freud.locality.LinkCell property) (freud.locality.NeighborQuery property) polytopes (freud.locality.Voronoi property) powers (freud.order.ContinuousCoordination property) projections (freud.environment.LocalBondProjection property)

Q

q_threshold (freud.order.SolidLiquid property) ql (freud.order.Steinhardt property) ql_ij (freud.order.SolidLiquid property) query() (freud.locality.AABBQuery method) (freud.locality.LinkCell method) (freud.locality.NeighborQuery method)

query_point_count (freud.interface.Interface property) query_point_ids (freud.interface.Interface property) query_point_indices (freud.locality.NeighborList property)

R

r_max (freud.density.GaussianDensity property) (freud.density.LocalDensity property) (freud.density.SphereVoxelization property)

radii_of_gyration (freud.cluster.ClusterProperties property) RDF (class in freud.density) rdf (freud.density.RDF property) RotationalAutocorrelation (class in freud.order)

S

S_k (freud.diffraction.StaticStructureFactorDebye property) (freud.diffraction.StaticStructureFactorDirect property) sc() (freud.data.UnitCell class method) scale (freud.order.Cubatic property) seed (freud.order.Cubatic property) segments (freud.locality.NeighborList property) set_num_threads() (in module freud.parallel) sigma (freud.density.GaussianDensity property) sizes (freud.cluster.ClusterProperties property)

solid_threshold (freud.order.SolidLiquid property) SolidLiquid (class in freud.order) sort() (freud.locality.NeighborList method) sph (freud.environment.LocalDescriptors property) SphereVoxelization (class in freud.density) square() (freud.box.Box class method) (freud.data.UnitCell class method) StaticStructureFactorDebye (class in freud.diffraction) StaticStructureFactorDirect (class in freud.diffraction) Steinhardt (class in freud.order)

T

t_final (freud.order.Cubatic property) t_initial (freud.order.Cubatic property) to_box_lengths_and_angles() (freud.box.Box method) to_box_params() (freud.box.Box method)

to_dict() (freud.box.Box method) to_image() (freud.diffraction.DiffractionPattern method) to_matrix() (freud.box.Box method) toNeighborList() (freud.locality.NeighborQueryResult method)

U

unfiltered_nlist (freud.locality.Filter property) (freud.locality.FilterRAD property) (freud.locality.FilterSANN property)

UnitCell (class in freud.data) unwrap() (freud.box.Box method)

V

v1 (freud.box.Box property) v2 (freud.box.Box property) v3 (freud.box.Box property) vectors (freud.locality.NeighborList property)

volume (freud.box.Box property) volumes (freud.locality.Voronoi property) Voronoi (class in freud.locality) voxels (freud.density.SphereVoxelization property)

W

weighted (freud.order.Hexatic property) (freud.order.Steinhardt property) weights (freud.locality.NeighborList property)

width (freud.density.GaussianDensity property) (freud.density.SphereVoxelization property) wl (freud.order.Steinhardt property) wrap() (freud.box.Box method)

X

xy (freud.box.Box property)

xz (freud.box.Box property)

Y

yz (freud.box.Box property)