Index

Symbols

--COVERAGE

A

a1 (freud.data.UnitCell property) a2 (freud.data.UnitCell property) a3 (freud.data.UnitCell property) AABBQuery (class in freud.locality) all_pairs() (freud.locality.NeighborList class method)

angles (freud.environment.AngularSeparationGlobal property) (freud.environment.AngularSeparationNeighbor property) AngularSeparationGlobal (class in freud.environment) AngularSeparationNeighbor (class in freud.environment) average (freud.order.Steinhardt attribute)

B

basis_positions (freud.data.UnitCell property) bcc() (freud.data.UnitCell class method) bin_centers (freud.density.CorrelationFunction attribute) (freud.density.RDF attribute) (freud.diffraction.StaticStructureFactorDirect attribute) (freud.environment.BondOrder attribute) (freud.pmft.PMFTR12 attribute) (freud.pmft.PMFTXY attribute) (freud.pmft.PMFTXYT attribute) (freud.pmft.PMFTXYZ attribute) bin_counts (freud.density.CorrelationFunction property) (freud.density.RDF property) (freud.environment.BondOrder property) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) bin_edges (freud.density.CorrelationFunction attribute) (freud.density.RDF attribute) (freud.diffraction.StaticStructureFactorDirect attribute) (freud.environment.BondOrder attribute) (freud.pmft.PMFTR12 attribute) (freud.pmft.PMFTXY attribute) (freud.pmft.PMFTXYT attribute) (freud.pmft.PMFTXYZ attribute) bond_order (freud.environment.BondOrder property) BondOrder (class in freud.environment)

bounds (freud.density.CorrelationFunction attribute) (freud.density.RDF attribute) (freud.diffraction.StaticStructureFactorDebye attribute) (freud.diffraction.StaticStructureFactorDirect attribute) (freud.environment.BondOrder attribute) (freud.pmft.PMFTR12 attribute) (freud.pmft.PMFTXY attribute) (freud.pmft.PMFTXYT attribute) (freud.pmft.PMFTXYZ attribute) Box (class in freud.box) box (freud.data.UnitCell property) (freud.density.CorrelationFunction property) (freud.density.GaussianDensity property) (freud.density.LocalDensity property) (freud.density.RDF property) (freud.density.SphereVoxelization property) (freud.environment.BondOrder property) (freud.locality.AABBQuery attribute) (freud.locality.LinkCell attribute) (freud.locality.NeighborQuery attribute) (freud.msd.MSD attribute) (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) buffer_box (freud.locality.PeriodicBuffer property) buffer_ids (freud.locality.PeriodicBuffer property) buffer_points (freud.locality.PeriodicBuffer property)

C

cell_width (freud.locality.LinkCell attribute) center() (freud.box.Box method) center_of_mass() (freud.box.Box method) centers (freud.cluster.ClusterProperties property) centers_of_mass (freud.cluster.ClusterProperties property) Cluster (class in freud.cluster) cluster_environments (freud.environment.EnvironmentCluster property) cluster_idx (freud.cluster.Cluster property) (freud.environment.EnvironmentCluster property) (freud.order.SolidLiquid property) cluster_keys (freud.cluster.Cluster property) cluster_masses (freud.cluster.ClusterProperties property) cluster_sizes (freud.order.SolidLiquid property) ClusterProperties (class in freud.cluster) compute() (freud.cluster.Cluster method) (freud.cluster.ClusterProperties method) (freud.density.CorrelationFunction method) (freud.density.GaussianDensity method) (freud.density.LocalDensity method) (freud.density.RDF method) (freud.density.SphereVoxelization method) (freud.diffraction.DiffractionPattern method) (freud.diffraction.StaticStructureFactorDebye method) (freud.diffraction.StaticStructureFactorDirect method) (freud.environment.AngularSeparationGlobal method) (freud.environment.AngularSeparationNeighbor method) (freud.environment.BondOrder method) (freud.environment.EnvironmentCluster method) (freud.environment.EnvironmentMotifMatch method) (freud.environment.LocalBondProjection method) (freud.environment.LocalDescriptors method) (freud.interface.Interface method) (freud.locality.Filter method) (freud.locality.FilterRAD method) (freud.locality.FilterSANN method) (freud.locality.PeriodicBuffer method) (freud.locality.Voronoi method) (freud.msd.MSD method) (freud.order.Cubatic method) (freud.order.Hexatic method) (freud.order.Nematic method) (freud.order.RotationalAutocorrelation method) (freud.order.SolidLiquid method) (freud.order.Steinhardt method) (freud.order.Translational method) (freud.pmft.PMFTR12 method) (freud.pmft.PMFTXY method) (freud.pmft.PMFTXYT method) (freud.pmft.PMFTXYZ method)

compute_all_distances() (freud.box.Box method) compute_distances() (freud.box.Box method) contains() (freud.box.Box method) copy() (freud.locality.NeighborList method) correlation (freud.density.CorrelationFunction property) CorrelationFunction (class in freud.density) Cubatic (class in freud.order) cubatic_tensor (freud.order.Cubatic property) cube() (freud.box.Box class method) cubic (freud.box.Box attribute)

D

default_query_args (freud.cluster.Cluster attribute) (freud.density.CorrelationFunction attribute) (freud.density.LocalDensity attribute) (freud.density.RDF attribute) (freud.environment.AngularSeparationNeighbor attribute) (freud.environment.BondOrder attribute) (freud.environment.EnvironmentCluster attribute) (freud.environment.EnvironmentMotifMatch attribute) (freud.environment.LocalBondProjection attribute) (freud.environment.LocalDescriptors attribute) (freud.interface.Interface attribute) (freud.locality.Filter attribute) (freud.locality.FilterRAD attribute) (freud.locality.FilterSANN attribute) (freud.order.Hexatic attribute) (freud.order.SolidLiquid attribute) (freud.order.Steinhardt attribute) (freud.order.Translational attribute) (freud.pmft.PMFTR12 attribute) (freud.pmft.PMFTXY attribute) (freud.pmft.PMFTXYT attribute) (freud.pmft.PMFTXYZ attribute)

density (freud.density.GaussianDensity property) (freud.density.LocalDensity property) diameter (freud.density.LocalDensity attribute) diffraction (freud.diffraction.DiffractionPattern property) DiffractionPattern (class in freud.diffraction) dimensions (freud.box.Box attribute) (freud.data.UnitCell property) director (freud.order.Nematic property) distances (freud.locality.NeighborList attribute)

E

EnvironmentCluster (class in freud.environment)

EnvironmentMotifMatch (class in freud.environment)

F

fcc() (freud.data.UnitCell class method) Filter (class in freud.locality) filter() (freud.locality.NeighborList method) filter_r() (freud.locality.NeighborList method) filtered_nlist (freud.locality.Filter property) (freud.locality.FilterRAD property) (freud.locality.FilterSANN property) FilterRAD (class in freud.locality) FilterSANN (class in freud.locality) find_first_index() (freud.locality.NeighborList method) freud.box module freud.cluster module freud.data module freud.density module freud.diffraction module

freud.environment module freud.interface module freud.locality module freud.msd module freud.order module freud.parallel module freud.pmft module from_arrays() (freud.locality.NeighborList class method) from_box() (freud.box.Box class method) from_matrix() (freud.box.Box class method) from_system() (freud.locality.AABBQuery class method) (freud.locality.LinkCell class method) (freud.locality.NeighborQuery class method)

G

GaussianDensity (class in freud.density) generate_system() (freud.data.UnitCell method) get_box_vector() (freud.box.Box method) get_images() (freud.box.Box method)

get_num_threads() (in module freud.parallel) global_tensor (freud.order.Cubatic property) grid_size (freud.diffraction.DiffractionPattern attribute) gyrations (freud.cluster.ClusterProperties property)

H

hex() (freud.data.UnitCell class method)

Hexatic (class in freud.order)

I

inertia_tensors (freud.cluster.ClusterProperties property)

Interface (class in freud.interface) is2D (freud.box.Box attribute)

K

k (freud.order.Hexatic attribute) (freud.order.Translational attribute) k_max (freud.diffraction.StaticStructureFactorDebye attribute) (freud.diffraction.StaticStructureFactorDirect attribute) k_min (freud.diffraction.StaticStructureFactorDebye attribute) (freud.diffraction.StaticStructureFactorDirect attribute)

k_points (freud.diffraction.StaticStructureFactorDirect property) k_values (freud.diffraction.DiffractionPattern property) (freud.diffraction.StaticStructureFactorDebye attribute) k_vectors (freud.diffraction.DiffractionPattern property)

L

L (freud.box.Box attribute) l (freud.order.RotationalAutocorrelation attribute) (freud.order.SolidLiquid attribute) (freud.order.Steinhardt attribute) L_inv (freud.box.Box attribute) l_max (freud.environment.LocalDescriptors attribute) largest_cluster_size (freud.order.SolidLiquid property)

lattice_vectors (freud.data.UnitCell property) LinkCell (class in freud.locality) LocalBondProjection (class in freud.environment) LocalDensity (class in freud.density) LocalDescriptors (class in freud.environment) Lx (freud.box.Box attribute) Ly (freud.box.Box attribute) Lz (freud.box.Box attribute)

M

make_absolute() (freud.box.Box method) make_fractional() (freud.box.Box method) make_random_system() (in module freud.data) matches (freud.environment.EnvironmentMotifMatch property) min_valid_k (freud.diffraction.StaticStructureFactorDebye property) (freud.diffraction.StaticStructureFactorDirect property) mode (freud.environment.BondOrder attribute) (freud.environment.LocalDescriptors attribute) module freud.box freud.cluster freud.data freud.density freud.diffraction freud.environment freud.interface freud.locality freud.msd freud.order freud.parallel freud.pmft

MSD (class in freud.msd) msd (freud.msd.MSD property)

N

N_points (freud.diffraction.DiffractionPattern property) n_r (freud.density.RDF property) n_replicates (freud.order.Cubatic attribute) nbins (freud.density.CorrelationFunction attribute) (freud.density.RDF attribute) (freud.diffraction.StaticStructureFactorDirect attribute) (freud.environment.BondOrder attribute) (freud.pmft.PMFTR12 attribute) (freud.pmft.PMFTXY attribute) (freud.pmft.PMFTXYT attribute) (freud.pmft.PMFTXYZ attribute) negative_m (freud.environment.LocalDescriptors attribute) neighbor_counts (freud.locality.NeighborList attribute) NeighborList (class in freud.locality) NeighborQuery (class in freud.locality) NeighborQueryResult (class in freud.locality) Nematic (class in freud.order)

nematic_tensor (freud.order.Nematic property) nlist (freud.environment.AngularSeparationNeighbor property) (freud.environment.LocalBondProjection property) (freud.environment.LocalDescriptors property) (freud.locality.Voronoi property) (freud.order.SolidLiquid property) normalize_q (freud.order.SolidLiquid attribute) normed_projections (freud.environment.LocalBondProjection property) num_clusters (freud.cluster.Cluster property) (freud.environment.EnvironmentCluster property) num_connections (freud.order.SolidLiquid property) num_k_values (freud.diffraction.StaticStructureFactorDebye attribute) num_neighbors (freud.density.LocalDensity property) num_points (freud.locality.NeighborList attribute) num_query_points (freud.locality.NeighborList attribute) num_sampled_k_points (freud.diffraction.StaticStructureFactorDirect attribute) num_sphs (freud.environment.LocalDescriptors property) NumThreads (class in freud.parallel)

O

order (freud.order.Cubatic property) (freud.order.Nematic property) (freud.order.RotationalAutocorrelation property) (freud.order.Steinhardt property)

orientation (freud.order.Cubatic property) output_size (freud.diffraction.DiffractionPattern attribute)

P

particle_harmonics (freud.order.SolidLiquid property) (freud.order.Steinhardt property) particle_msd (freud.msd.MSD property) particle_order (freud.order.Cubatic property) (freud.order.Hexatic property) (freud.order.RotationalAutocorrelation property) (freud.order.Steinhardt property) (freud.order.Translational property) particle_tensor (freud.order.Nematic property) periodic (freud.box.Box attribute) periodic_x (freud.box.Box attribute) periodic_y (freud.box.Box attribute) periodic_z (freud.box.Box attribute) PeriodicBuffer (class in freud.locality) plot() (freud.box.Box method) (freud.cluster.Cluster method) (freud.density.CorrelationFunction method) (freud.density.GaussianDensity method) (freud.density.RDF method) (freud.density.SphereVoxelization method) (freud.diffraction.DiffractionPattern method) (freud.diffraction.StaticStructureFactorDebye method) (freud.diffraction.StaticStructureFactorDirect method) (freud.environment.EnvironmentCluster method) (freud.locality.AABBQuery method) (freud.locality.LinkCell method) (freud.locality.NeighborQuery method) (freud.locality.Voronoi method) (freud.msd.MSD method) (freud.order.Hexatic method) (freud.order.SolidLiquid method) (freud.order.Steinhardt method) (freud.pmft.PMFTXY method)

pmft (freud.pmft.PMFTR12 property) (freud.pmft.PMFTXY property) (freud.pmft.PMFTXYT property) (freud.pmft.PMFTXYZ property) PMFTR12 (class in freud.pmft) PMFTXY (class in freud.pmft) PMFTXYT (class in freud.pmft) PMFTXYZ (class in freud.pmft) point_count (freud.interface.Interface property) point_environments (freud.environment.EnvironmentCluster property) (freud.environment.EnvironmentMotifMatch property) point_ids (freud.interface.Interface property) point_indices (freud.locality.NeighborList attribute) points (freud.locality.AABBQuery attribute) (freud.locality.LinkCell attribute) (freud.locality.NeighborQuery attribute) polytopes (freud.locality.Voronoi property) projections (freud.environment.LocalBondProjection property)

Q

q_threshold (freud.order.SolidLiquid attribute) ql (freud.order.Steinhardt property) ql_ij (freud.order.SolidLiquid property) query() (freud.locality.AABBQuery method) (freud.locality.LinkCell method) (freud.locality.NeighborQuery method)

query_point_count (freud.interface.Interface property) query_point_ids (freud.interface.Interface property) query_point_indices (freud.locality.NeighborList attribute)

R

r_max (freud.density.GaussianDensity attribute) (freud.density.LocalDensity attribute) (freud.density.SphereVoxelization attribute)

radii_of_gyration (freud.cluster.ClusterProperties property) RDF (class in freud.density) rdf (freud.density.RDF property) RotationalAutocorrelation (class in freud.order)

S

S_k (freud.diffraction.StaticStructureFactorDebye property) (freud.diffraction.StaticStructureFactorDirect property) sc() (freud.data.UnitCell class method) scale (freud.order.Cubatic attribute) seed (freud.order.Cubatic attribute) segments (freud.locality.NeighborList attribute) set_num_threads() (in module freud.parallel) sigma (freud.density.GaussianDensity attribute) sizes (freud.cluster.ClusterProperties property)

solid_threshold (freud.order.SolidLiquid attribute) SolidLiquid (class in freud.order) sort() (freud.locality.NeighborList method) sph (freud.environment.LocalDescriptors property) SphereVoxelization (class in freud.density) square() (freud.box.Box class method) (freud.data.UnitCell class method) StaticStructureFactorDebye (class in freud.diffraction) StaticStructureFactorDirect (class in freud.diffraction) Steinhardt (class in freud.order)

T

t_final (freud.order.Cubatic attribute) t_initial (freud.order.Cubatic attribute) TBB_INCLUDE_DIR TBBROOT

to_dict() (freud.box.Box method) to_image() (freud.diffraction.DiffractionPattern method) to_matrix() (freud.box.Box method) toNeighborList() (freud.locality.NeighborQueryResult method) Translational (class in freud.order)

U

u (freud.order.Nematic attribute) unfiltered_nlist (freud.locality.Filter property) (freud.locality.FilterRAD property) (freud.locality.FilterSANN property)

UnitCell (class in freud.data) unwrap() (freud.box.Box method)

V

v1 (freud.box.Box attribute) v2 (freud.box.Box attribute) v3 (freud.box.Box attribute)

volume (freud.box.Box attribute) volumes (freud.locality.Voronoi property) Voronoi (class in freud.locality) voxels (freud.density.SphereVoxelization property)

W

weighted (freud.order.Hexatic attribute) (freud.order.Steinhardt attribute) weights (freud.locality.NeighborList attribute)

width (freud.density.GaussianDensity attribute) (freud.density.SphereVoxelization attribute) wl (freud.order.Steinhardt attribute) wrap() (freud.box.Box method)

X

xy (freud.box.Box attribute)

xz (freud.box.Box attribute)

Y

yz (freud.box.Box attribute)