freud
v0.9.0
Contents
Examples
Installation
Modules
Development Guide
References and Citations
License
Credits
freud
Docs
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Index
Edit on Bitbucket
Index
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A
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B
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C
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D
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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U
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V
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W
_
__call__() (freud.index.Index2D method)
(freud.index.Index3D method)
A
accumulate() (freud.density.ComplexCF method)
(freud.density.FloatCF method)
(freud.density.RDF method)
(freud.environment.BondOrder method)
(freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
add_ptype() (freud.kspace.SingleCell3D method)
addFT() (freud.kspace.FTfactory method)
AlignedBoxConstraint (class in freud.kspace)
AnalyzeSFactor3D (class in freud.kspace)
AngularSeparation (class in freud.environment)
(class in freud.order)
B
BondingAnalysis (class in freud.bond)
BondingR12 (class in freud.bond)
BondingXY2D (class in freud.bond)
BondingXYT (class in freud.bond)
BondingXYZ (class in freud.bond)
BondOrder (class in freud.environment)
(class in freud.order)
Box (class in freud.box)
C
calculate() (freud.kspace.SingleCell3D method)
Cluster (class in freud.cluster)
cluster() (freud.environment.MatchEnv method)
ClusterProperties (class in freud.cluster)
ComplexCF (class in freud.density)
compute (freud.voronoi.Voronoi attribute)
compute() (freud.bond.BondingAnalysis method)
(freud.bond.BondingR12 method)
(freud.bond.BondingXY2D method)
(freud.bond.BondingXYT method)
(freud.bond.BondingXYZ method)
(freud.density.ComplexCF method)
(freud.density.FloatCF method)
(freud.density.GaussianDensity method)
(freud.density.LocalDensity method)
(freud.density.RDF method)
(freud.environment.BondOrder method)
(freud.environment.LocalDescriptors method)
(freud.environment.Pairing2D method)
(freud.interface.InterfaceMeasure method)
(freud.kspace.FTdelta method)
(freud.kspace.FTpolyhedron method)
(freud.kspace.SFactor3DPoints method)
(freud.locality.LinkCell method)
(freud.locality.NearestNeighbors method)
(freud.order.CubaticOrderParameter method)
(freud.order.HexOrderParameter method)
(freud.order.LocalQl method)
(freud.order.NematicOrderParameter method)
(freud.order.SolLiq method)
(freud.order.SolLiqNear method)
(freud.order.TransOrderParameter method)
(freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
compute_py() (freud.kspace.FTconvexPolyhedron method)
computeAve() (freud.order.LocalQl method)
(freud.order.LocalQlNear method)
(freud.order.LocalWlNear method)
computeAveNorm() (freud.order.LocalQl method)
(freud.order.LocalQlNear method)
(freud.order.LocalWlNear method)
computeCellList() (freud.locality.LinkCell method)
computeClusterMembership() (freud.cluster.Cluster method)
computeClusters() (freud.cluster.Cluster method)
computeGlobal() (freud.environment.AngularSeparation method)
computeNeighbor() (freud.environment.AngularSeparation method)
computeNeighbors (freud.voronoi.Voronoi attribute)
computeNList() (freud.environment.LocalDescriptors method)
computeNorm() (freud.order.LocalQl method)
(freud.order.LocalQlNear method)
(freud.order.LocalWlNear method)
computeProperties() (freud.cluster.ClusterProperties method)
computeSolLiqNoNorm() (freud.order.SolLiq method)
(freud.order.SolLiqNear method)
computeSolLiqVariant() (freud.order.SolLiq method)
(freud.order.SolLiqNear method)
computeVolumes (freud.voronoi.Voronoi attribute)
constrainedLatticePoints() (in module freud.kspace)
Constraint (class in freud.kspace)
copy() (freud.locality.NeighborList method)
CubaticOrderParameter (class in freud.order)
cube() (freud.box.Box method)
D
DeltaSpot (class in freud.kspace)
F
filter() (freud.locality.NeighborList method)
filter_r() (freud.locality.NeighborList method)
find_first_index() (freud.locality.NeighborList method)
FloatCF (class in freud.density)
freud.bond (module)
freud.box (module)
freud.cluster (module)
freud.density (module)
freud.environment (module)
freud.index (module)
freud.interface (module)
freud.kspace (module)
freud.locality (module)
freud.order (module)
freud.parallel (module)
freud.pmft (module)
freud.voronoi (module)
from_arrays() (freud.locality.NeighborList method)
from_box() (freud.box.Box method)
from_matrix() (freud.box.Box method)
FTbase (class in freud.kspace)
FTconvexPolyhedron (class in freud.kspace)
FTdelta (class in freud.kspace)
FTfactory (class in freud.kspace)
FTpolyhedron (class in freud.kspace)
FTsphere (class in freud.kspace)
G
GaussianDensity (class in freud.density)
GaussianSpot (class in freud.kspace)
get_cubatic_order_parameter() (freud.order.CubaticOrderParameter method)
get_cubatic_tensor() (freud.order.CubaticOrderParameter method)
get_density() (freud.kspace.FTbase method)
get_director() (freud.order.NematicOrderParameter method)
get_form_factors() (freud.kspace.SingleCell3D method)
get_gen_r4_tensor() (freud.order.CubaticOrderParameter method)
get_global_tensor() (freud.order.CubaticOrderParameter method)
get_gridPoints() (freud.kspace.DeltaSpot method)
get_nematic_order_parameter() (freud.order.NematicOrderParameter method)
get_nematic_tensor() (freud.order.NematicOrderParameter method)
get_orientation() (freud.order.CubaticOrderParameter method)
get_parambyname() (freud.kspace.FTbase method)
get_params() (freud.kspace.FTbase method)
get_particle_op() (freud.order.CubaticOrderParameter method)
get_particle_tensor() (freud.order.CubaticOrderParameter method)
(freud.order.NematicOrderParameter method)
get_ptypes() (freud.kspace.SingleCell3D method)
get_radius() (freud.kspace.FTconvexPolyhedron method)
(freud.kspace.FTpolyhedron method)
(freud.kspace.FTsphere method)
get_scale() (freud.kspace.FTbase method)
(freud.order.CubaticOrderParameter method)
get_t_final() (freud.order.CubaticOrderParameter method)
get_t_initial() (freud.order.CubaticOrderParameter method)
getAveQl() (freud.order.LocalQl method)
getAveWl() (freud.order.LocalWl method)
getBinCounts() (freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getBondLifetimes() (freud.bond.BondingAnalysis method)
getBondOrder() (freud.environment.BondOrder method)
getBonds() (freud.bond.BondingR12 method)
(freud.bond.BondingXY2D method)
(freud.bond.BondingXYT method)
(freud.bond.BondingXYZ method)
getBox() (freud.bond.BondingR12 method)
(freud.bond.BondingXY2D method)
(freud.bond.BondingXYT method)
(freud.bond.BondingXYZ method)
(freud.cluster.Cluster method)
(freud.cluster.ClusterProperties method)
(freud.density.ComplexCF method)
(freud.density.FloatCF method)
(freud.density.GaussianDensity method)
(freud.density.LocalDensity method)
(freud.density.RDF method)
(freud.environment.BondOrder method)
(freud.environment.Pairing2D method)
(freud.locality.LinkCell method)
(freud.locality.NearestNeighbors method)
(freud.order.HexOrderParameter method)
(freud.order.LocalQl method)
(freud.order.SolLiq method)
(freud.order.TransOrderParameter method)
(freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getBuffer (freud.voronoi.Voronoi attribute)
getCell() (freud.locality.LinkCell method)
getCellNeighbors() (freud.locality.LinkCell method)
getClusterCOM() (freud.cluster.ClusterProperties method)
getClusterG() (freud.cluster.ClusterProperties method)
getClusterIdx() (freud.cluster.Cluster method)
getClusterKeys() (freud.cluster.Cluster method)
getClusters() (freud.environment.MatchEnv method)
(freud.order.SolLiq method)
getClusterSizes() (freud.cluster.ClusterProperties method)
(freud.order.SolLiq method)
getCoordinates() (freud.box.Box method)
getCounts() (freud.density.ComplexCF method)
(freud.density.FloatCF method)
getDensity() (freud.density.LocalDensity method)
getDr() (freud.order.TransOrderParameter method)
getEnvironment() (freud.environment.MatchEnv method)
getFT() (freud.kspace.FTbase method)
getFTlist() (freud.kspace.FTfactory method)
getFTobject() (freud.kspace.FTfactory method)
getGaussianDensity() (freud.density.GaussianDensity method)
getGlobalAngles() (freud.environment.AngularSeparation method)
getImage() (freud.box.Box method)
getInverseJacobian() (freud.pmft.PMFTR12 method)
getJacobian() (freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getK() (freud.order.HexOrderParameter method)
getL() (freud.box.Box method)
getLargestClusterSize() (freud.order.SolLiq method)
getLatticeVector() (freud.box.Box method)
getLinv() (freud.box.Box method)
getListMap() (freud.bond.BondingR12 method)
(freud.bond.BondingXY2D method)
(freud.bond.BondingXYT method)
(freud.bond.BondingXYZ method)
getLMax() (freud.environment.LocalDescriptors method)
getLx() (freud.box.Box method)
getLy() (freud.box.Box method)
getLz() (freud.box.Box method)
getMatch() (freud.environment.Pairing2D method)
getNBinsPhi() (freud.environment.BondOrder method)
getNBinsR() (freud.pmft.PMFTR12 method)
getNBinsT() (freud.pmft.PMFTXYT method)
getNBinsT1() (freud.pmft.PMFTR12 method)
getNBinsT2() (freud.pmft.PMFTR12 method)
getNBinsTheta() (freud.environment.BondOrder method)
getNBinsX() (freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getNBinsY() (freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getNBinsZ() (freud.pmft.PMFTXYZ method)
getNeighborAngles() (freud.environment.AngularSeparation method)
getNeighborList (freud.voronoi.Voronoi attribute)
getNeighborList() (freud.locality.NearestNeighbors method)
getNeighbors (freud.voronoi.Voronoi attribute)
getNeighbors() (freud.locality.NearestNeighbors method)
getNGlobal() (freud.environment.AngularSeparation method)
getNP() (freud.environment.AngularSeparation method)
(freud.environment.LocalDescriptors method)
(freud.environment.MatchEnv method)
(freud.order.HexOrderParameter method)
(freud.order.LocalQl method)
(freud.order.SolLiq method)
(freud.order.TransOrderParameter method)
getNr() (freud.density.RDF method)
getNRef() (freud.locality.NearestNeighbors method)
getNReference() (freud.environment.AngularSeparation method)
getNSphs() (freud.environment.LocalDescriptors method)
getNumberOfConnections() (freud.order.SolLiq method)
getNumBonds() (freud.bond.BondingAnalysis method)
getNumCells() (freud.locality.LinkCell method)
getNumClusters() (freud.cluster.Cluster method)
(freud.cluster.ClusterProperties method)
(freud.environment.MatchEnv method)
getNumElements() (freud.index.Index2D method)
(freud.index.Index3D method)
getNumFrames() (freud.bond.BondingAnalysis method)
getNumNeighbors() (freud.density.LocalDensity method)
(freud.locality.NearestNeighbors method)
getNumParticles() (freud.bond.BondingAnalysis method)
(freud.cluster.Cluster method)
getOverallLifetimes() (freud.bond.BondingAnalysis method)
getPair() (freud.environment.Pairing2D method)
getPCF() (freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getPeakDegeneracy() (freud.kspace.AnalyzeSFactor3D method)
getPeakList() (freud.kspace.AnalyzeSFactor3D method)
getPeriodic() (freud.box.Box method)
getPeriodicX() (freud.box.Box method)
getPeriodicY() (freud.box.Box method)
getPeriodicZ() (freud.box.Box method)
getPhi() (freud.environment.BondOrder method)
getPMFT() (freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getPsi() (freud.order.HexOrderParameter method)
getQ() (freud.kspace.SFactor3DPoints method)
getQl() (freud.order.LocalQl method)
getQlAveNorm() (freud.order.LocalQl method)
getQldot_ij() (freud.order.SolLiq method)
getQlmi() (freud.order.SolLiq method)
getQlNorm() (freud.order.LocalQl method)
getR() (freud.density.ComplexCF method)
(freud.density.FloatCF method)
(freud.density.RDF method)
(freud.pmft.PMFTR12 method)
getRCut() (freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getRDF() (freud.density.ComplexCF method)
(freud.density.FloatCF method)
(freud.density.RDF method)
getRevListMap() (freud.bond.BondingR12 method)
(freud.bond.BondingXY2D method)
(freud.bond.BondingXYT method)
(freud.bond.BondingXYZ method)
getRMax() (freud.environment.LocalDescriptors method)
(freud.locality.NearestNeighbors method)
getRsq() (freud.locality.NearestNeighbors method)
getRsqList() (freud.locality.NearestNeighbors method)
getS() (freud.kspace.SFactor3DPoints method)
getSComplex() (freud.kspace.SFactor3DPoints method)
getSph() (freud.environment.LocalDescriptors method)
getSvsQ() (freud.kspace.AnalyzeSFactor3D method)
getT() (freud.pmft.PMFTXYT method)
getT1() (freud.pmft.PMFTR12 method)
getT2() (freud.pmft.PMFTR12 method)
getTheta() (freud.environment.BondOrder method)
getTiltFactorXY() (freud.box.Box method)
getTiltFactorXZ() (freud.box.Box method)
getTiltFactorYZ() (freud.box.Box method)
getTotEnvironment() (freud.environment.MatchEnv method)
getTransitionMatrix() (freud.bond.BondingAnalysis method)
getUINTMAX() (freud.locality.NearestNeighbors method)
getVolume() (freud.box.Box method)
getVolumes (freud.voronoi.Voronoi attribute)
getVoronoiPolytopes (freud.voronoi.Voronoi attribute)
getWl() (freud.order.LocalWl method)
getWlAveNorm() (freud.order.LocalWl method)
getWlNorm() (freud.order.LocalWl method)
getWrappedVectors() (freud.locality.NearestNeighbors method)
getX() (freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getY() (freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
getZ() (freud.pmft.PMFTXYZ method)
H
HexOrderParameter (class in freud.order)
I
Index2D (class in freud.index)
Index3D (class in freud.index)
initialize() (freud.bond.BondingAnalysis method)
InterfaceMeasure (class in freud.interface)
is2D() (freud.box.Box method)
isSimilar() (freud.environment.MatchEnv method)
IteratorLinkCell (class in freud.locality)
itercell() (freud.locality.LinkCell method)
L
LinkCell (class in freud.locality)
LocalDensity (class in freud.density)
LocalDescriptors (class in freud.environment)
(class in freud.order)
LocalQl (class in freud.order)
LocalQlNear (class in freud.order)
LocalWl (class in freud.order)
LocalWlNear (class in freud.order)
M
makeCoordinates() (freud.box.Box method)
makeFraction() (freud.box.Box method)
makeSpot() (freud.kspace.DeltaSpot method)
(freud.kspace.GaussianSpot method)
MatchEnv (class in freud.environment)
(class in freud.order)
matchMotif() (freud.environment.MatchEnv method)
meshgrid2() (in module freud.kspace)
minimizeRMSD() (freud.environment.MatchEnv method)
minRMSDMotif() (freud.environment.MatchEnv method)
N
NearestNeighbors (class in freud.locality)
NeighborList (class in freud.locality)
NematicOrderParameter (class in freud.order)
next() (freud.locality.IteratorLinkCell method)
NumThreads (class in freud.parallel)
P
Pairing2D (class in freud.environment)
(class in freud.order)
PMFTR12 (class in freud.pmft)
PMFTXY2D (class in freud.pmft)
PMFTXYT (class in freud.pmft)
PMFTXYZ (class in freud.pmft)
R
RDF (class in freud.density)
reciprocalLattice3D() (in module freud.kspace)
reduceBondOrder() (freud.environment.BondOrder method)
reduceCorrelationFunction() (freud.density.ComplexCF method)
(freud.density.FloatCF method)
reducePCF() (freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
reduceRDF() (freud.density.RDF method)
remove_ptype() (freud.kspace.SingleCell3D method)
resetBondOrder() (freud.environment.BondOrder method)
resetCorrelationFunction() (freud.density.ComplexCF method)
(freud.density.FloatCF method)
resetDensity() (freud.density.GaussianDensity method)
resetPCF() (freud.pmft.PMFTR12 method)
(freud.pmft.PMFTXY2D method)
(freud.pmft.PMFTXYT method)
(freud.pmft.PMFTXYZ method)
resetRDF() (freud.density.RDF method)
S
satisfies() (freud.kspace.AlignedBoxConstraint method)
(freud.kspace.Constraint method)
set2D() (freud.box.Box method)
set_active() (freud.kspace.SingleCell3D method)
set_box() (freud.kspace.SingleCell3D method)
set_density() (freud.kspace.FTbase method)
(freud.kspace.FTdelta method)
(freud.kspace.FTpolyhedron method)
set_dK() (freud.kspace.SingleCell3D method)
set_form_factor() (freud.kspace.SingleCell3D method)
set_inactive() (freud.kspace.SingleCell3D method)
set_K() (freud.kspace.FTbase method)
(freud.kspace.FTdelta method)
(freud.kspace.FTpolyhedron method)
set_k() (freud.kspace.SingleCell3D method)
set_ndiv() (freud.kspace.SingleCell3D method)
set_param() (freud.kspace.SingleCell3D method)
set_parambyname() (freud.kspace.FTbase method)
set_params() (freud.kspace.FTpolyhedron method)
set_radius() (freud.kspace.FTconvexPolyhedron method)
(freud.kspace.FTpolyhedron method)
(freud.kspace.FTsphere method)
set_rq() (freud.kspace.FTbase method)
(freud.kspace.FTdelta method)
(freud.kspace.FTpolyhedron method)
(freud.kspace.SingleCell3D method)
set_scale() (freud.kspace.FTbase method)
(freud.kspace.FTdelta method)
(freud.kspace.SingleCell3D method)
set_sigma() (freud.kspace.GaussianSpot method)
set_xy() (freud.kspace.DeltaSpot method)
(freud.kspace.GaussianSpot method)
setBox (freud.voronoi.Voronoi attribute)
setBox() (freud.environment.MatchEnv method)
(freud.order.LocalQl method)
(freud.order.SolLiq method)
setBufferWidth (freud.voronoi.Voronoi attribute)
setClusteringRadius() (freud.order.SolLiq method)
setCutMode() (freud.locality.NearestNeighbors method)
setL() (freud.box.Box method)
setNumThreads() (freud.parallel method)
setPeriodic() (freud.box.Box method)
setPeriodicX() (freud.box.Box method)
setPeriodicY() (freud.box.Box method)
setPeriodicZ() (freud.box.Box method)
setRMax() (freud.locality.NearestNeighbors method)
SFactor3DPoints (class in freud.kspace)
SingleCell3D (class in freud.kspace)
SolLiq (class in freud.order)
SolLiqNear (class in freud.order)
Spoly2D() (freud.kspace.FTconvexPolyhedron method)
Spoly3D() (freud.kspace.FTconvexPolyhedron method)
square() (freud.box.Box method)
T
to_dict() (freud.box.Box method)
to_matrix() (freud.box.Box method)
to_tuple() (freud.box.Box method)
TransOrderParameter (class in freud.order)
U
unwrap() (freud.box.Box method)
update_bases() (freud.kspace.SingleCell3D method)
update_K_constraint() (freud.kspace.SingleCell3D method)
update_Kpoints() (freud.kspace.SingleCell3D method)
V
Voronoi (class in freud.voronoi)
W
wrap() (freud.box.Box method)